Using the Velvet <i>de novo</i> Assembler for Short‐Read Sequencing Technologies 论文

详细信息

发表期刊/会议

Current Protocols in Bioinformatics

发表日期

2010-09-01

发表年份

2010

摘要

The Velvet de novo assembler was designed to build contigs and eventually scaffolds from short-read sequencing data. This protocol describes how to use Velvet, interpret its output, and tune its parameters for optimal results. It also covers practical issues such as configuration, using the VelvetOptimiser routine, and processing colorspace data.